Abstract
The persistence of multidrug-resistant (MDR)
Author Contributions
Copyright© 2024
Mutile Kavai Susan, et al.
License
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Introduction
Typhoid fever caused by Previous studies have identified MDR Despite the endemic nature of typhoid fever in LMICs like Kenya, these countries often lack access to high-quality diagnostic tools such as whole genome sequencing, which can accurately identify and confirm circulating MDR Multidrug resistance in Previous studies in Africa and Asia have focused on MDR
Materials And Methods
We analyzed archived The symptomatic individuals (cases) were recruited into the study if ≤ 16 years and presenting to study health facilities with a history of fever ≥38°C for the last three days and/or with three or more diarrhoea episodes. The cases were excluded from the study if they had taken antibiotics in the last 3 days. Asymptomatic (controls) children were recruited into the study if they presented to the clinics for vaccinations and/or with non-typhoid related symptoms. Archived A sterile swab was then used to spread the suspension onto Mueller Hinton agar (Oxoid, Basingstoke, UK) prior to dispensing the antibiotic discs. Isolates were tested for susceptibility to amoxicillin -clavulanic acid (AMC, 30 µg), ampicillin (AMP, 10 µg), azithromycin (AZM, 15 µg), cefotaxime (CTX, 30 µg), cefpodoxime (CPD, 10 µg), ceftazidime (CAZ, 30 µg), ceftriaxone (CRO, 30 µg), chloramphenicol (CHL, 30 µg), ciprofloxacin (CIP, 5 µg), gentamicin (GEN, 10 µg), kanamycin (KAN, 30 µg), nalidixic acid (NAL, 30 µg), co-trimoxazole (SXT, 25 µg), and tetracycline (TET, 30 µg), all from Oxoid Basingstoke, UK. The Zymo Research Quick-DNA Fungal/Bacterial kit (California, USA) was used for genomic DNA extraction following the instructions provided. A Nanodrop reader (Thermo Fisher, MA, USA) was used to estimate DNA quality and quantity. Sequencing was conducted at SeqCoast Genomics (New Hampshire, USA) using the Illumina (Nextseq2000, USA) sequencing platform. The quality of the raw reads was assessed using FastQC v0.11.9 Genome assemblies were uploaded to https://pathogen.watch/ and multi-locus sequence typing (MLST) done using the http://mlst.warwick.ac.uk/mlst/dbs/Senterica database.
Results
From a total of 215 archived All 60 Two types of plasmids were identified in 39 (65%) of the isolates; 38 (97%) of isolates had All except one
Discussion
Typhoid carriage has significant importance to the disease transmission in LMICs in SSA and Southeast Asia where the disease is endemic Our WGS data showed that 30% of the presumed We observed that the predominant We observed that H58 was the sole Our study reported Our data showed presence of AMR genes ( In addition to the resistance to first line drugs, some isolates had AMR genes such as The co-occurrence of these genes in some of the isolates in both symptomatic and asymptomatic individuals is worrisome and could be as a result of misuse of these antibiotics overtime leading to their reduced efficacy. Typhoid disease caused by such
Conclusion
It is evident that H58 is responsible for MDR Typhoid fever infections since its emergence and persistent spread in SSA, and particularly Kenya. Our study reports presence of MDR H58 in both symptomatic and asymptomatic children. Presence of MDR